* using log directory 'd:/Rcompile/CRANpkg/local/4.5/kmeRtone.Rcheck' * using R Under development (unstable) (2025-03-11 r87944 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'kmeRtone/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'kmeRtone' version '1.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'kmeRtone' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 14.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [4s] OK * checking whether the package can be loaded with stated dependencies ... [4s] OK * checking whether the package can be unloaded cleanly ... [4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s] OK * checking whether the namespace can be unloaded cleanly ... [5s] OK * checking loading without being on the library search path ... [5s] OK * checking whether startup messages can be suppressed ... [5s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [66s] ERROR Running 'testthat.R' [65s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(kmeRtone) > > testthat::test_check("kmeRtone") ------------------------------------------------------------ Extraction of Case K-mers ------------------------------------------------------------ Extracting 2-mers from chr20............[ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_score.R:25:1'): (code run outside of `test_that()`) ──────────── Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/' Backtrace: ▆ 1. └─kmeRtone::kmeRtone(...) at test_score.R:25:1 2. └─kmeRtone::SCORE(...) 3. └─kmeRtone::extractKmers(...) 4. └─future.apply::future_lapply(...) 5. └─future.apply:::future_xapply(...) 6. ├─future::value(fs) 7. └─future:::value.list(fs) 8. ├─future::resolve(...) 9. └─future:::resolve.list(...) 10. └─future (local) signalConditionsASAP(obj, resignal = FALSE, pos = ii) 11. └─future:::signalConditions(...) [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... [13s] OK * DONE Status: 1 ERROR