* using log directory 'd:/Rcompile/CRANpkg/local/4.3/ForestTools.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'ForestTools/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ForestTools' version '1.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ForestTools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [10s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [1s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [29s] ERROR Running 'testthat.R' [29s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ForestTools) > > test_check("ForestTools") [ FAIL 16 | WARN 0 | SKIP 0 | PASS 43 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_glcm_internal.R:67:3'): 0 degree GLCM metrics ──────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("hallbey0") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 1.29166666666667 | 1.29166666666667 [6] [7] 1.03993055555556 | 1.03993055555556 [7] [8] 0.719532554257095 | 0.719532554257095 [8] - 2.58333333333333 [9] ── Failure ('test_glcm_internal.R:68:3'): 0 degree GLCM metrics ──────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("tumor0") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 13.1434988179669 | 13.1434988179669 [6] [7] 42.3200700277764 | 42.3200700277764 [7] [8] 0.930178604767005 | 0.930178604767005 [8] - 26.2869976359338 [9] ── Failure ('test_glcm_internal.R:69:3'): 0 degree GLCM metrics ──────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("noise0") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 15.3875510204081 | 15.3875510204081 [6] [7] 85.2810286963765 | 85.2810286963765 [7] [8] 0.0195225863576815 | 0.0195225863576815 [8] - 30.7751020408163 [9] ── Failure ('test_glcm_internal.R:70:3'): 0 degree GLCM metrics ──────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("bars0") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" `actual[6:8]`: 9.5 30.25 0.983471074380165 `expected[6:9]`: 9.5 30.25 0.983471074380165 19 ── Failure ('test_glcm_internal.R:76:3'): 45 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("hallbey45") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 1.22222222222222 | 1.22222222222222 [6] [7] 0.839506172839506 | 0.839506172839506 [7] [8] 0.735294117647059 | 0.735294117647059 [8] - 2.44444444444444 [9] ── Failure ('test_glcm_internal.R:77:3'): 45 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("tumor45") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 13.2294685990338 | 13.2294685990338 [6] [7] 42.8362330509463 | 42.8362330509463 [7] [8] 0.843353524583834 | 0.843353524583834 [8] - 26.4589371980676 [9] ── Failure ('test_glcm_internal.R:78:3'): 45 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("noise45") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 15.3496459808414 | 15.3496459808414 [6] [7] 85.1320167426421 | 85.1320167426421 [7] [8] -0.00613755233092562 | -0.00613755233092562 [8] - 30.6992919616826 [9] ── Failure ('test_glcm_internal.R:79:3'): 45 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("bars45") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" `actual[6:8]`: 9.5 30.25 0.983471074380165 `expected[6:9]`: 9.5 30.25 0.983471074380165 19 ── Failure ('test_glcm_internal.R:85:3'): 90 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("hallbey90") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 1.16666666666667 | 1.16666666666667 [6] [7] 0.972222222222222 | 0.972222222222222 [7] [8] 0.485714285714286 | 0.485714285714286 [8] - 2.33333333333333 [9] ── Failure ('test_glcm_internal.R:86:3'): 90 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("tumor90") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 13.1424858223062 | 13.1424858223062 [6] [7] 42.5314463726724 | 42.5314463726724 [7] [8] 0.888634608157374 | 0.888634608157374 [8] - 26.2849716446125 [9] ── Failure ('test_glcm_internal.R:87:3'): 90 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("noise90") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 15.3314285714286 | 15.3314285714286 [6] [7] 85.2921959183674 | 85.2921959183674 [7] [8] 0.0234960846239587 | 0.0234960846239587 [8] - 30.6628571428571 [9] ── Failure ('test_glcm_internal.R:88:3'): 90 degree GLCM metrics ─────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("bars90") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" `actual[6:8]`: 9.5 33.25 1 `expected[6:9]`: 9.5 33.25 1 19 ── Failure ('test_glcm_internal.R:94:3'): 135 degree GLCM metrics ────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("hallbey135") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 1.22222222222222 | 1.22222222222222 [6] [7] 1.06172839506173 | 1.06172839506173 [7] [8] 0.162790697674419 | 0.162790697674419 [8] - 2.44444444444444 [9] ── Failure ('test_glcm_internal.R:95:3'): 135 degree GLCM metrics ────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("tumor135") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 13.2299516908213 | 13.2299516908213 [6] [7] 42.8316632826904 | 42.8316632826904 [7] [8] 0.862939448271703 | 0.862939448271703 [8] - 26.4599033816425 [9] ── Failure ('test_glcm_internal.R:96:3'): 135 degree GLCM metrics ────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("noise135") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" actual | expected [6] 15.3513119533528 | 15.3513119533528 [6] [7] 85.1695828268834 | 85.1695828268834 [7] [8] -0.0290198479483709 | -0.0290198479483709 [8] - 30.7026239067056 [9] ── Failure ('test_glcm_internal.R:97:3'): 135 degree GLCM metrics ────────────── GLCMTextures::glcm_metrics(...) (`actual`) not equal to read_validation_metrics("bars135") (`expected`). `names(actual)[6:8]`: "glcm_mean" "glcm_variance" "glcm_correlation" `names(expected)[6:9]`: "glcm_mean" "glcm_variance" "glcm_correlation" "glcm_SA" `actual[6:8]`: 9.5 30.25 0.983471074380165 `expected[6:9]`: 9.5 30.25 0.983471074380165 19 [ FAIL 16 | WARN 0 | SKIP 0 | PASS 43 ] Error: Test failures Execution halted * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 1 ERROR