* using log directory 'd:/Rcompile/CRANpkg/local/4.3/easyDifferentialGeneCoexpression.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'easyDifferentialGeneCoexpression/DESCRIPTION' ... OK * this is package 'easyDifferentialGeneCoexpression' version '1.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'easyDifferentialGeneCoexpression' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [16s] OK * checking whether the package can be loaded with stated dependencies ... [16s] OK * checking whether the package can be unloaded cleanly ... [16s] OK * checking whether the namespace can be loaded with stated dependencies ... [17s] OK * checking whether the namespace can be unloaded cleanly ... [16s] OK * checking loading without being on the library search path ... [17s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [35s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [21s] ERROR Running examples in 'easyDifferentialGeneCoexpression-Ex.R' failed The error most likely occurred in: > ### Name: easyDifferentialGeneCoexpression > ### Title: Function that computes the differential coexpression of a list > ### of probesets in a specific dataset and returns the most significant > ### pairs > ### Aliases: easyDifferentialGeneCoexpression > > ### ** Examples > > > probesetList <- c("200738_s_at", "217356_s_at", "206686_at") > verboseFlag <- "TRUE" > batchCorrection <- "TRUE" > signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList, + "GSE3268", "description", "Normal", "Tumor", verboseFlag) Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268 Found 1 file(s) GSE3268_series_matrix.txt.gz Error in .Call(R_download_curl, url, tmp, quiet, mode, handle, nonblocking) : reached elapsed time limit Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [17s] OK * checking PDF version of manual ... [15s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 ERROR