Last updated on 2024-08-16 15:49:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 7.02 | 723.70 | 730.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 4.66 | 465.47 | 470.13 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 1162.47 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 1102.81 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 8.00 | 491.00 | 499.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 7.93 | 682.99 | 690.92 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 7.41 | 682.70 | 690.11 | OK | |
| r-release-macos-arm64 | 1.1.1 | 227.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 526.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 10.00 | 473.00 | 483.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 341.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 698.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 11.00 | 666.00 | 677.00 | OK |
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [21s/27s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [17s/23s] OK
‘summarise.Rmd’ using ‘UTF-8’... [20s/27s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [13s/16s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.1.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 185-229 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [37s/66s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [31s/59s] OK
‘summarise.Rmd’ using ‘UTF-8’... [35s/62s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [25s/40s] OK
Flavor: r-oldrel-macos-x86_64