CRAN Package Check Results for Package filearray

Last updated on 2024-11-14 03:49:14 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.8 61.06 96.54 157.60 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.9 48.18 61.92 110.10 OK
r-devel-linux-x86_64-fedora-clang 0.1.9 285.41 OK
r-devel-linux-x86_64-fedora-gcc 0.1.9 310.87 OK
r-devel-windows-x86_64 0.1.9 75.00 136.00 211.00 OK
r-patched-linux-x86_64 0.1.9 67.07 87.01 154.08 OK
r-release-linux-x86_64 0.1.9 68.55 87.61 156.16 OK
r-release-macos-arm64 0.1.9 77.00 OK
r-release-macos-x86_64 0.1.9 141.00 OK
r-release-windows-x86_64 0.1.9 79.00 131.00 210.00 OK
r-oldrel-macos-arm64 0.1.9 77.00 OK
r-oldrel-macos-x86_64 0.1.9 158.00 OK
r-oldrel-windows-x86_64 0.1.9 81.00 155.00 236.00 OK

Check Details

Version: 0.1.8
Check: tests
Result: ERROR Running ‘testthat.R’ [45s/69s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(filearray) R CMD check mode. Using 2 threads. > > # Sys.setenv("FILEARRAY_SKIP_COLLAPSE" = "TRUE") > > cat(utils::capture.output({ + print(Sys.getenv()) + }), sep = "\n", file = stderr()) BIBINPUTS .:.:/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/bibtex/bib::/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/bibtex/bib: BSTINPUTS .:.:/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/bibtex/bst::/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/bibtex/bst: DISPLAY :110 EDITOR vi FILEARRAY_NUM_THREADS 2 GITHUB_PAT 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 HOME /home/hornik LANG C.UTF-8 LANGUAGE C LC_COLLATE C LD_LIBRARY_PATH /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server:/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib:/usr/lib/llvm-19/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-21-openjdk-amd64/lib/server LN_S ln -s LOGNAME hornik MAILTO Kurt.Hornik@wu.ac.at MAKE make MAKEFLAGS MAKELEVEL 1 MFLAGS -k -j42 --jobserver-auth=4,5 OLDPWD /home/hornik/tmp/R.check/r-devel-clang/Work OMPI_MCA_btl_base_warn_component_unused 0 OMP_NUM_THREADS 3 OMP_THREAD_LIMIT 3 OPENBLAS_NUM_THREADS 1 PAGER /usr/bin/less PATH /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/filearray.Rcheck/R_check_bin:/home/hornik/bin:/usr/local/bin:/usr/bin:/bin PIP_DISABLE_PIP_VERSION_CHECK true PIP_NO_CACHE_DIR false PIP_NO_USER 1 PIP_NO_WARN_SCRIPT_LOCATION false PIP_REQUIRE_VIRTUALENV true POCL_KERNEL_CACHE 0 PWD /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/filearray.Rcheck/tests RCPP_PARALLEL_NUM_THREADS 4 RETICULATE_MINICONDA_PATH /home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/R/reticulate/miniconda RETICULATE_VIRTUALENV_ROOT /home/hornik/tmp/scratch/check-CRAN-regular-hornik/.virtualenvs R_ARCH R_BATCH R_BIOC_VERSION 3.20 R_BROWSER false R_BZIPCMD /usr/bin/bzip2 R_CMD /home/hornik/tmp/R.check/r-devel-clang/Work/build/bin/Rcmd R_DEFAULT_PACKAGES R_DOC_DIR /home/hornik/tmp/R.check/r-devel-clang/Work/build/doc R_ENVIRON R_ENVIRON_USER R_GC_MEM_GROW 2 R_GZIPCMD /usr/bin/gzip R_HOME /home/hornik/tmp/R.check/r-devel-clang/Work/build R_INCLUDE_DIR /home/hornik/tmp/R.check/r-devel-clang/Work/build/include R_LIBS /home/hornik/tmp/scratch/RtmpFGvDAD/RLIBS_3eea5a4e9f7e3a R_LIBS_SITE NULL R_LIBS_USER NULL R_MAKEVARS_USER /home/hornik/.R/Makevars-clang R_OSTYPE unix R_PAPERSIZE a4 R_PAPERSIZE_USER a4 R_PARALLEL_PORT random R_PDFVIEWER false R_PLATFORM x86_64-pc-linux-gnu R_PRINTCMD lpr R_PROFILE R_PROFILE_USER R_RD4PDF times,inconsolata,hyper R_SESSION_TMPDIR /home/hornik/tmp/scratch/Rtmpk2t93Q R_SHARE_DIR /home/hornik/tmp/R.check/r-devel-clang/Work/build/share R_STRIP_SHARED_LIB strip --strip-unneeded R_STRIP_STATIC_LIB strip --strip-debug R_TESTS startup.Rs R_TEXI2DVICMD /usr/bin/texi2dvi R_UNZIPCMD /usr/bin/unzip R_USER_CACHE_DIR /home/hornik/tmp/scratch/check-CRAN-regular-hornik/cache R_USER_CONFIG_DIR /home/hornik/tmp/scratch/check-CRAN-regular-hornik/config R_USER_DATA_DIR /home/hornik/tmp/scratch/check-CRAN-regular-hornik/data R_VERSION 4.5.0 R_ZIPCMD /usr/bin/zip SED /usr/bin/sed SHELL /bin/sh SHLVL 0 TAR /usr/bin/tar TEXINPUTS .:.:/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex::/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex: TMPDIR /home/hornik/tmp/scratch XAUTHORITY /home/hornik/tmp/scratch/xvfb-run.Q4wJPA/Xauthority _CHECK_CRAN_REGULAR_FLAVOR_ r-devel-clang _CHECK_CRAN_REGULAR_LIBRARY_DIR_ /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages _CHECK_CRAN_REGULAR_REPOSITORIES_ CRAN=file:///srv/R/Repositories/CRAN;BioCsoft=file:///srv/R/Repositories/Bioconductor/3.20/bioc;BioCann=file:///srv/R/Repositories/Bioconductor/3.20/data/annotation;BioCexp=file:///srv/R/Repositories/Bioconductor/3.20/data/experiment _R_BIND_S3_DISPATCH_FORCE_IDENTICAL_METHODS_ false _R_CALLS_INVALID_NUMERIC_VERSION_ true _R_CHECK_ALWAYS_LOG_VIGNETTE_OUTPUT_ true _R_CHECK_AUTOCONF_ true _R_CHECK_BOGUS_RETURN_ true _R_CHECK_BROWSER_NONINTERACTIVE_ true _R_CHECK_CODETOOLS_PROFILE_ suppressPartialMatchArgs=false _R_CHECK_CODE_ASSIGN_TO_GLOBALENV_ true _R_CHECK_CODE_ATTACH_ true _R_CHECK_CODE_DATA_INTO_GLOBALENV_ true _R_CHECK_CODE_USAGE_VIA_NAMESPACES_ true _R_CHECK_CODE_USAGE_WITH_ONLY_BASE_ATTACHED_ true _R_CHECK_COMPILATION_FLAGS_ true _R_CHECK_COMPILATION_FLAGS_KNOWN_ -Wno-error=enum-constexpr-conversion _R_CHECK_CRAN_INCOMING_CHECK_URLS_IN_PARALLEL_ true _R_CHECK_DEPENDS_ONLY_DATA_ true _R_CHECK_DEPRECATED_DEFUNCT_ true _R_CHECK_DOC_SIZES2_ true _R_CHECK_DOTCODE_RETVAL_ true _R_CHECK_DOT_FIRSTLIB_ true _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_EXECUTABLES_EXCLUSIONS_ false _R_CHECK_FORCE_SUGGESTS_ false _R_CHECK_FUTURE_FILE_TIMESTAMPS_ true _R_CHECK_FUTURE_FILE_TIMESTAMPS_LEEWAY_ 6h _R_CHECK_INSTALL_DEPENDS_ true _R_CHECK_INSTALL_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_INTERNALS2_ 1 _R_CHECK_LENGTH_1_CONDITION_ package:_R_CHECK_PACKAGE_NAME_,verbose _R_CHECK_LICENSE_ TRUE _R_CHECK_LIMIT_CORES_ true _R_CHECK_LOG_USE_INFO_ true _R_CHECK_MATRIX_DATA_ true _R_CHECK_MBCS_CONVERSION_FAILURE_ true _R_CHECK_NO_RECOMMENDED_ true _R_CHECK_NO_STOP_ON_TEST_ERROR_ true _R_CHECK_OVERWRITE_REGISTERED_S3_METHODS_ true _R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_ true _R_CHECK_PACKAGES_USED_IN_TESTS_USE_SUBDIRS_ true _R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_ true _R_CHECK_PACKAGE_NAME_ filearray _R_CHECK_PKG_SIZES_ false _R_CHECK_PRAGMAS_ true _R_CHECK_RD_LINE_WIDTHS_ true _R_CHECK_RD_MATH_RENDERING_ true _R_CHECK_RD_NOTE_LOST_BRACES_ true _R_CHECK_RD_VALIDATE_RD2HTML_ true _R_CHECK_REPLACING_IMPORTS_ true _R_CHECK_R_DEPENDS_ true _R_CHECK_R_ON_PATH_ true _R_CHECK_SCREEN_DEVICE_ stop _R_CHECK_SERIALIZATION_ true _R_CHECK_SHLIB_OPENMP_FLAGS_ true _R_CHECK_SRC_MINUS_W_IMPLICIT_ true _R_CHECK_STOP_ON_INVALID_NUMERIC_VERSION_INPUTS_ true _R_CHECK_SUGGESTS_ONLY_ true _R_CHECK_SUPPRESS_RANDR_MESSAGE_ true _R_CHECK_SYSTEM_CLOCK_ false _R_CHECK_TESTS_NLINES_ 0 _R_CHECK_TEST_TIMING_ yes _R_CHECK_TEST_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_THINGS_IN_CHECK_DIR_ true _R_CHECK_THINGS_IN_TEMP_DIR_EXCLUDE_ ^(ompi|pmix-gds-shmem|pulse|runtime-) _R_CHECK_TIMINGS_ 0 _R_CHECK_TOPLEVEL_FILES_ true _R_CHECK_VALIDATE_UTF8_ true _R_CHECK_VC_DIRS_ true _R_CHECK_VIGNETTES_NLINES_ 10000 _R_CHECK_VIGNETTES_SKIP_RUN_MAYBE_ true _R_CHECK_VIGNETTE_TIMING_ yes _R_CHECK_VIGNETTE_TIMING_CPU_TO_ELAPSED_THRESHOLD_ 2.5 _R_CHECK_VIGNETTE_TITLES_ true _R_CHECK_XREFS_NOTE_MISSING_PACKAGE_ANCHORS_ true _R_CHECK_XREFS_USE_ALIASES_FROM_CRAN_ true _R_CXX_USE_NO_REMAP_ false _R_GC_FAIL_ON_ERROR_ true _R_NCOL_NULL_IS_ZERO_ true _R_SHLIB_BUILD_OBJECTS_SYMBOL_TABLES_ true _R_USE_STRICT_R_HEADERS_ false __R_CHECK_DOC_FILES_NOTE_IF_ALL_SPECIAL__ TRUE > > test_check("filearray") [ FAIL 1 | WARN 0 | SKIP 3 | PASS 933 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On CRAN (3): 'test-collapse.R:85:5', 'test-collapse.R:196:5', 'test-collapse.R:308:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-cpp.R:53:5'): C++: Utils ─────────────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'bit64' Backtrace: ▆ 1. ├─testthat::expect_equal(loc2idx(locs, dim), as_int64(re1)) at test-cpp.R:53:5 2. │ └─testthat:::expect_waldo_equal("equal", act, exp, info, ..., tolerance = tolerance) 3. │ └─testthat:::waldo_compare(...) 4. │ └─waldo::compare(x, y, ..., x_arg = x_arg, y_arg = y_arg) 5. │ └─waldo:::compare_structure(x, y, paths = c(x_arg, y_arg), opts = opts) 6. │ └─waldo:::compare_vector(x, y, paths = paths, opts = opts) 7. │ └─waldo:::num_equal(x, y, opts$tolerance) 8. └─base::loadNamespace(x) 9. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 10. └─base (local) withOneRestart(expr, restarts[[1L]]) 11. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 1 | WARN 0 | SKIP 3 | PASS 933 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang