Last updated on 2024-06-18 15:49:56 CEST.
| Package | ERROR | OK |
|---|---|---|
| JGL | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 2.3.2
Check: examples
Result: ERROR
Running examples in ‘JGL-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: net.edges
> ### Title: List the edges in a network
> ### Aliases: net.edges
>
> ### ** Examples
>
> ## load an example dataset with K=two classes, p=200 features, and n=100 samples per class:
> data(example.data)
> str(example.data)
List of 2
$ : num [1:100, 1:200] 0.395 -2.03 -1.704 -0.469 1.75 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : NULL
.. ..$ : chr [1:200] "gene 1" "gene 2" "gene 3" "gene 4" ...
$ : num [1:100, 1:200] -1.548 1.45 -0.812 -0.589 0.69 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : NULL
.. ..$ : chr [1:200] "gene 1" "gene 2" "gene 3" "gene 4" ...
> ## run fgl:
> fgl.results = JGL(Y=example.data,penalty="fused",lambda1=.25,lambda2=.1)
> ## get edges list:
> net.edges(fgl.results$theta)
[[1]]
Error in gsize(x) :
At vendor/cigraph/src/core/vector.pmt:515 : Assertion failed: v->stor_begin != NULL. This is an unexpected igraph error; please report this as a bug, along with the steps to reproduce it.
Please restart your R session to avoid crashes or other surprising behavior.
Calls: <Anonymous> ... stopifnot -> %+% -> stopifnot -> %+% -> stopifnot -> gsize
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang