Last updated on 2024-06-19 03:51:06 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dQTG.seq | 13 | ||
| mrMLM | 10 | 3 | |
| mrMLM.GUI | 2 | 11 | |
| QTL.gCIMapping | 1 | 1 | 11 |
| QTL.gCIMapping.GUI | 13 | ||
| SEA | 8 | 5 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 5.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) MultiManhattan.Rd:33: Lost braces; missing escapes or markup?
33 | \item{LogTimes}{Magnification of {-log10(P-value)}; the default is
| ^
checkRd: (-1) MultiManhattan.Rd:35: Lost braces; missing escapes or markup?
35 | \item{LODTimes}{Magnification of {LOD score}; the default is 1.2.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 5.0.1
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
extdata 1.7Mb
libs 2.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 4.0.2
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
extdata 1.7Mb
libs 2.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 3.4
Check: examples
Result: ERROR
Running examples in ‘QTL.gCIMapping-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ZhouMethod_single_env
> ### Title: The second step of Zhou method for single environment
> ### Aliases: ZhouMethod_single_env
>
> ### ** Examples
>
> data(F2data)
> readraw<-Readdata(file=F2data,fileFormat="GCIM",
+ method="GCIM-QEI",filecov=NULL,
+ MCIMmap=NULL,MultiEnv=FALSE)
> DoResult<-Dodata(fileFormat="GCIM",Population="F2",
+ method="GCIM-QEI",Model="Random",
+ readraw,MultiEnv=FALSE)
> ZhouMatrices<-ZhouF(pheRaw=DoResult$pheRaw,
+ genRaw=DoResult$genRaw,mapRaw1=DoResult$mapRaw1,
+ WalkSpeed=1,CriLOD=3,dir=tempdir())
--Read the following data:
49 individuals
100 markers
4 phenotypes
--Cross type: f2
> OutputZhou<-ZhouMethod_single_env(Model="Random",
+ pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
+ mapRaw=ZhouMatrices$mapRaw,CriLOD=3,NUM=1,
+ yygg=DoResult$yygg1,genoname=ZhouMatrices$genoname,
+ Ax0=ZhouMatrices$Ax0,Hx0=ZhouMatrices$Hx0,
+ Bx0=ZhouMatrices$Bx0,Ax=ZhouMatrices$Ax,
+ Hx=ZhouMatrices$Hx,Bx=ZhouMatrices$Bx,
+ dir=tempdir(),CriDis=5,CLO=2)
Error in serverSocket(port = port) :
creation of server socket failed: port 11731 cannot be opened
Calls: ZhouMethod_single_env ... single_locus_model -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
WenS 7.687 0.130 10.542
QTL.gCIMapping 1.350 0.348 8.238
ZhouMethod 1.040 0.160 6.735
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.4
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
extdata 3.0Mb
libs 1.0Mb
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 2.0.1
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
R 7.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64