GSEMA: Gene Set Enrichment Meta-Analysis

Performing the different steps of gene set enrichment meta-analysis. It provides different functions that allow the application of meta-analysis based on the combination of effect sizes from different pathways in different studies to obtain significant pathways that are common to all of them.

Version: 0.99.3
Depends: R (≥ 4.4)
Imports: Biobase, limma, Rdpack, singscore, GSVA, progress, pbapply, doParallel, parallel, BiocParallel, metafor, RColorBrewer, pheatmap, methods, scales, plyr, grDevices, stats, impute
Suggests: BiocStyle, qpdf, BiocGenerics, RUnit, knitr, rmarkdown
Published: 2024-10-14
DOI: 10.32614/CRAN.package.GSEMA
Author: Juan Antonio Villatoro-García [aut, cre], Pablo Jurado-Bascón [aut], Pedro Carmona-Sáez [aut]
Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: GSEMA results

Documentation:

Reference manual: GSEMA.pdf
Vignettes: Gene Set Enrichment Meta-Analysis with GSEMA package (source, R code)

Downloads:

Package source: GSEMA_0.99.3.tar.gz
Windows binaries: r-devel: GSEMA_0.99.3.zip, r-release: GSEMA_0.99.3.zip, r-oldrel: not available
macOS binaries: r-release (arm64): GSEMA_0.99.3.tgz, r-oldrel (arm64): not available, r-release (x86_64): GSEMA_0.99.3.tgz, r-oldrel (x86_64): not available

Linking:

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