GeneStructureTools

DOI: 10.18129/B9.bioc.GeneStructureTools    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GeneStructureTools.

Tools for spliced gene structure manipulation and analysis

Bioconductor version: 3.10

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneStructureTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneStructureTools")

 

HTML	R Script	Introduction to GeneStructureTools
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics
Version	1.6.0
In Bioconductor since	BioC 3.7 (R-3.5) (2 years)
License	BSD_3_clause + file LICENSE
Depends
Imports	Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneStructureTools_1.6.0.tar.gz
Windows Binary	GeneStructureTools_1.6.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GeneStructureTools_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneStructureTools
Package Short Url	https://bioconductor.org/packages/GeneStructureTools/
Package Downloads Report	Download Stats