The diffloopdata
package contains an example dataset for
use with the diffloop package.
It contains chromosome 1 data from 6 ChIA-PET samples.1,2 The raw FASTQ read files were
preprocessed with the dnaloop
(https://github.com/aryeelab/dnaloop) package.
1Hnisz, Denes, et
al. “Activation of proto-oncogenes by disruption of chromosome
neighborhoods.” Science (2016): aad9024.
2Ji, Xiong, et al. “3D Chromosome
Regulatory Landscape of Human Pluripotent Cells.” Cell stem cell
(2015).