Lun ATL and Smyth GK (2015). “csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.” Nucleic Acids Res..

Lun ATL and Smyth GK (2014). “De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.” Nucleic Acids Res., 42(11), pp. e95.