Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Irizarry RA, Leek JT and Jaffe AE (2016). “Flexible expressed region analysis for RNA-seq with derfinder.” bioRxiv.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA and Leek JT (2014). “Differential expression analysis of RNA-seq data at single-base resolution.” Biostatistics, 15 (3), pp. 413-426.