To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAnD")
In most cases, you don't need to download the package archive at all.
CAnD
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see CAnD.
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Bioconductor version: 3.3
Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.
Author: Caitlin McHugh
Maintainer: Caitlin McHugh <mchughc at uw.edu>
Citation (from within R,
enter citation("CAnD")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAnD")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAnD")
| R Script | Detecting heterogenity in population structure across chromosomes with the "CAnD" package | |
| Reference Manual |
Details
| biocViews | GeneticVariability, Genetics, SNP, Software, StatisticalMethod |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, ggplot2, reshape |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CAnD_1.4.0.tar.gz |
| Windows Binary | CAnD_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | CAnD_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CAnD/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/CAnD/ |
| Package Downloads Report | Download Stats |
Documentation »
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