To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")

In most cases, you don't need to download the package archive at all.

CGHbase

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see CGHbase.

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: 3.3

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")


PDF		Reference Manual

biocViews	CopyNumberVariation, Infrastructure, Microarray, Software
Version	1.32.0
In Bioconductor since	BioC 2.3 (R-2.8) (8 years)
License	GPL
Depends	R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/tgac-vumc/CGHbase
BugReports	https://github.com/tgac-vumc/CGHbase/issues
Depends On Me	CGHcall, CGHnormaliter, CGHregions, GeneBreak, sigaR
Imports Me	CGHnormaliter, plrs, QDNAseq
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	CGHbase_1.32.0.tar.gz
Windows Binary	CGHbase_1.32.0.zip
Mac OS X 10.9 (Mavericks)	CGHbase_1.32.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CGHbase/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/CGHbase/
Package Downloads Report	Download Stats

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