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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CHRONOS")
In most cases, you don't need to download the package archive at all.
CHRONOS
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see CHRONOS.
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Bioconductor version: 3.3
A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.
Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos
Maintainer: Panos Balomenos <balomenos at upatras.gr>
Citation (from within R,
enter citation("CHRONOS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CHRONOS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CHRONOS")
| R Script | CHRONOS | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, circlize, graph, stats, utils, grDevices, graphics, biomaRt |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr |
| SystemRequirements | Java version >= 1.7, Pandoc |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CHRONOS_1.0.3.tar.gz |
| Windows Binary | CHRONOS_1.0.3.zip |
| Mac OS X 10.9 (Mavericks) | CHRONOS_1.0.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CHRONOS/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/CHRONOS/ |
| Package Downloads Report | Download Stats |
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