To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IHW")
In most cases, you don't need to download the package archive at all.
IHW
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see IHW.
Independent Hypothesis Weighting
Bioconductor version: 3.3
Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.
Author: Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut]
Maintainer: Nikos Ignatiadis <nikos.ignatiadis01 at gmail.com>
Citation (from within R,
enter citation("IHW")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IHW")
Documentation
| HTML | R Script | Introduction to IHW |
| Reference Manual |
Details
| biocViews | MultipleComparison, RNASeq, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0) |
| Imports | methods, slam, lpsymphony, fdrtool, BiocGenerics |
| LinkingTo | |
| Suggests | ggplot2, scales, DESeq, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | IHWpaper |
| Imports Me | |
| Suggests Me | DESeq2 |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | IHW_1.0.2.tar.gz |
| Windows Binary | IHW_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | IHW_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/IHW/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/IHW/ |
| Package Downloads Report | Download Stats |
Documentation »
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