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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("INSPEcT")
In most cases, you don't need to download the package archive at all.
INSPEcT
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see INSPEcT.
Analysis of 4sU-seq and RNA-seq time-course data
Bioconductor version: 3.3
INSPEcT (INference of Synthesis, Processing and dEgradation rates in Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in order to evaluate synthesis, processing and degradation rates and asses via modeling the rates that determines changes in mature mRNA levels.
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo at gmail.com>
Citation (from within R,
enter citation("INSPEcT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("INSPEcT")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("INSPEcT")
| R Script | INSPEcT | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse |
| Version | 1.2.2 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL-2 |
| Depends | R (>= 3.2), methods, Biobase, BiocParallel |
| Imports | pROC, deSolve, rootSolve, compiler, preprocessCore, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors |
| LinkingTo | |
| Suggests | BiocStyle, knitr, TxDb.Mmusculus.UCSC.mm9.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | INSPEcT_1.2.2.tar.gz |
| Windows Binary | INSPEcT_1.2.2.zip |
| Mac OS X 10.9 (Mavericks) | INSPEcT_1.2.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/INSPEcT/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/INSPEcT/ |
| Package Downloads Report | Download Stats |
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