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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("InteractionSet")
In most cases, you don't need to download the package archive at all.
InteractionSet
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This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see InteractionSet.
Base Classes for Storing Genomic Interaction Data
Bioconductor version: 3.3
Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.
Author: Aaron Lun <alun at wehi.edu.au>, Malcolm Perry <mgperry32 at gmail.com>, Liz Ing-Simmons <liz.ing-simmons12 at csc.mrc.ac.uk>
Maintainer: Aaron Lun <alun at wehi.edu.au>
Citation (from within R,
enter citation("InteractionSet")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("InteractionSet")
Documentation
| HTML | R Script | Interacting with InteractionSet classes for genomic interaction data |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataRepresentation, HiC, Infrastructure, Software |
| Version | 1.0.4 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 3.3.0), GenomicRanges, SummarizedExperiment(>= 1.1.6) |
| Imports | IRanges, S4Vectors(>= 0.9.24), GenomeInfoDb, BiocGenerics, methods, Matrix |
| LinkingTo | |
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | diffHic, GenomicInteractions |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | InteractionSet_1.0.4.tar.gz |
| Windows Binary | InteractionSet_1.0.4.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | InteractionSet_1.0.4.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/InteractionSet/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/InteractionSet/ |
| Package Downloads Report | Download Stats |
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