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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSstats")
In most cases, you don't need to download the package archive at all.
MSstats
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see MSstats.
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Bioconductor version: 3.3
A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.
Author: Meena Choi <mnchoi67 at gmail.com>, Lin-Yang Cheng <cheng68 at purdue.edu>, Tsung-Heng Tsai <tsai.tsungheng at gmail.com>, Ching-Yun Chang <chang54 at purdue.edu>, Olga Vitek <o.vitek at neu.edu>
Maintainer: Meena Choi <mnchoi67 at gmail.com>
Citation (from within R,
enter citation("MSstats")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSstats")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstats")
| MSstats-manual.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 3.4.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2), ggplot2 (>= 2.0.0), Rcpp, grid, reshape2 |
| Imports | lme4, marray, limma, gplots, ggrepel, preprocessCore, data.table, MSnbase, reshape, survival, minpack.lm |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://msstats.org |
| BugReports | https://groups.google.com/forum/#!forum/msstats |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SWATH2stats |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MSstats_3.4.0.tar.gz |
| Windows Binary | MSstats_3.3.7.zip |
| Mac OS X 10.9 (Mavericks) | MSstats_3.3.11.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MSstats/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/MSstats/ |
| Package Downloads Report | Download Stats |
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