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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Mergeomics")
In most cases, you don't need to download the package archive at all.
Mergeomics
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see Mergeomics.
Integrative network analysis of omics data
Bioconductor version: 3.3
The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).
Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang
Maintainer: Zeyneb Kurt <zeyneb at ucla.edu>
Citation (from within R,
enter citation("Mergeomics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Mergeomics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mergeomics")
| R Script | Mergeomics | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.1) |
| Imports | |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Mergeomics_1.0.0.tar.gz |
| Windows Binary | Mergeomics_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | Mergeomics_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Mergeomics/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/Mergeomics/ |
| Package Downloads Report | Download Stats |
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