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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromPlot")
In most cases, you don't need to download the package archive at all.
chromPlot
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see chromPlot.
Global visualization tool of genomic data
Bioconductor version: 3.3
Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.
Author: Ricardo A. Verdugo and Karen Y. Orostica
Maintainer: Karen Y. Orostica <korostica09 at gmail.com>
Citation (from within R,
enter citation("chromPlot")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromPlot")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromPlot")
| R Script | General Manual | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL (>= 2) |
| Depends | stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.3.0) |
| Imports | |
| LinkingTo | |
| Suggests | qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | chromPlot_1.0.0.tar.gz |
| Windows Binary | chromPlot_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | chromPlot_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/chromPlot/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/chromPlot/ |
| Package Downloads Report | Download Stats |
Documentation »
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