To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")
In most cases, you don't need to download the package archive at all.
groHMM
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see groHMM.
GRO-seq Analysis Pipeline
Bioconductor version: 3.3
A pipeline for the analysis of GRO-seq data.
Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus
Maintainer: Anusha Nagari <anusha.nagari at utsouthwestern.edu>, Venkat Malladi <venkat.malladi at utsouthwestern.edu>, Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>
Citation (from within R,
enter citation("groHMM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("groHMM")
| R Script | groHMM tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), GenomeInfoDb, GenomicRanges(>= 1.23.16), GenomicAlignments, rtracklayer |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/Kraus-Lab/groHMM |
| BugReports | https://github.com/Kraus-Lab/groHMM/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | groHMM_1.6.0.tar.gz |
| Windows Binary | groHMM_1.6.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | groHMM_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/groHMM/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/groHMM/ |
| Package Downloads Report | Download Stats |
Documentation »
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