To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCheck")
In most cases, you don't need to download the package archive at all.
iCheck
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see iCheck.
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
Bioconductor version: 3.3
QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.
Author: Weiliang Qiu <stwxq at channing.harvard.edu>, Brandon Guo <brandowonder at gmail.com> Christopher Anderson <christopheranderson84 at gmail.com>, Barbara Klanderman <BKLANDERMAN at partners.org>, Vincent Carey <stvjc at channing.harvard.edu>, Benjamin Raby <rebar at channing.harvard.edu>
Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>
Citation (from within R,
enter citation("iCheck")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCheck")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iCheck")
| R Script | iCheck | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL (>= 2) |
| Depends | R (>= 3.2.0), Biobase, lumi, gplots |
| Imports | stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, vsn, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | iCheck_1.2.0.tar.gz |
| Windows Binary | iCheck_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | iCheck_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/iCheck/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/iCheck/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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