To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")

In most cases, you don't need to download the package archive at all.

nucleoSim

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see nucleoSim.

Generate synthetic nucleosome maps

Bioconductor version: 3.3

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

Author: Rawane Samb [aut], Astrid Deschênes [cre, aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("nucleoSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")

Documentation

HTML	R Script	Generate synthetic nucleosome maps
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Genetics, Sequencing, Software, StatisticalMethod
Version	1.0.2
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	Artistic-2.0
Depends
Imports	stats, IRanges, S4Vectors, graphics
LinkingTo
Suggests	BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL	https://github.com/arnauddroitlab/nucleoSim
BugReports	https://github.com/arnauddroitlab/nucleoSim/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	nucleoSim_1.0.2.tar.gz
Windows Binary	nucleoSim_1.0.2.zip
Mac OS X 10.9 (Mavericks)	nucleoSim_1.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/nucleoSim/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/nucleoSim/
Package Downloads Report	Download Stats

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