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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")
In most cases, you don't need to download the package archive at all.
similaRpeak
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor version: 3.3
This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.
Author: Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Louise Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>
Citation (from within R,
enter citation("similaRpeak")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")
Documentation
| HTML | R Script | Similarity between two ChIP-Seq profiles |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
| Version | 1.4.2 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R6 (>= 2.0) |
| Imports | rtracklayer, GenomicAlignments, Rsamtools |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/adeschen/similaRpeak |
| BugReports | https://github.com/adeschen/similaRpeak/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metagene |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | similaRpeak_1.4.2.tar.gz |
| Windows Binary | similaRpeak_1.4.2.zip |
| Mac OS X 10.9 (Mavericks) | similaRpeak_1.4.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/similaRpeak/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/similaRpeak/ |
| Package Downloads Report | Download Stats |
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