To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")
In most cases, you don't need to download the package archive at all.
traseR
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see traseR.
GWAS trait-associated SNP enrichment analyses in genomic intervals
Bioconductor version: 3.3
traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.
Author: Li Chen, Zhaohui S.Qin
Maintainer: li chen<li.chen at emory.edu>
Citation (from within R,
enter citation("traseR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("traseR")
| R Script | Perform GWAS trait-associated SNP enrichment analyses in genomic intervals | |
| Reference Manual |
Details
| biocViews | Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL |
| Depends | R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19 |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | traseR_1.2.0.tar.gz |
| Windows Binary | traseR_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | traseR_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/traseR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/traseR/ |
| Package Downloads Report | Download Stats |
Documentation »
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