- Home
- Bioconductor 3.3
- Experiment Packages
- MMDiffBamSubset
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")
In most cases, you don't need to download the package archive at all.
MMDiffBamSubset
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see MMDiffBamSubset.
Example ChIP-Seq data for the MMDiff package
Bioconductor version: 3.3
Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS
Author: Gabriele Schweikert
Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>
Citation (from within R,
enter citation("MMDiffBamSubset")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")
Documentation
| Reference Manual |
Details
| biocViews | ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell |
| Version | 1.8.0 |
| License | LGPL |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | MMDiff |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ChIPpeakAnno, MMDiff, MMDiff2 |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MMDiffBamSubset_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/MMDiffBamSubset/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
