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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GA4GHclient")
In most cases, you don't need to download the package archive at all.
GA4GHclient
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A Bioconductor package for accessing GA4GH API data servers
Bioconductor version: Release (3.5)
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]
Maintainer: Welliton Souza <well309 at gmail.com>
Citation (from within R,
enter citation("GA4GHclient")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GA4GHclient")
Documentation
| HTML | R Script | GA4GHclient |
| Reference Manual |
Details
| biocViews | DataRepresentation, Software, ThirdPartyClient |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL (>= 2) |
| Depends | S4Vectors |
| Imports | BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, purrr, VariantAnnotation |
| LinkingTo | |
| Suggests | AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/labbcb/GA4GHclient |
| BugReports | https://github.com/labbcb/GA4GHclient/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GA4GHclient_1.0.0.tar.gz |
| Windows Binary | GA4GHclient_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | GA4GHclient_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GA4GHclient |
| Package Short Url | http://bioconductor.org/packages/GA4GHclient/ |
| Package Downloads Report | Download Stats |
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