To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IHW")
In most cases, you don't need to download the package archive at all.
IHW
|
|
|
|
|
Independent Hypothesis Weighting
Bioconductor version: Release (3.5)
Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.
Author: Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut]
Maintainer: Nikos Ignatiadis <nikos.ignatiadis01 at gmail.com>
Citation (from within R,
enter citation("IHW")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IHW")
Documentation
| HTML | R Script | Introduction to IHW |
| Reference Manual |
Details
| biocViews | MultipleComparison, RNASeq, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0) |
| Imports | methods, slam, lpsymphony, fdrtool, BiocGenerics |
| LinkingTo | |
| Suggests | ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | IHWpaper |
| Imports Me | ideal |
| Suggests Me | DESeq2 |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IHW_1.4.0.tar.gz |
| Windows Binary | IHW_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | IHW_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IHW |
| Package Short Url | http://bioconductor.org/packages/IHW/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
