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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaboSignal")
In most cases, you don't need to download the package archive at all.
MetaboSignal
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MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Bioconductor version: Release (3.5)
MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.
Author: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <r.ayala14 at imperial.ac.uk>, Joram M. Posma <j.posma11 at imperial.ac.uk>, Ana L. Neves <ana.luisa.neves14 at imperial.ac.uk>, Marc-Emmanuel Dumas <m.dumas at imperial.ac.uk>
Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <r.ayala14 at imperial.ac.uk>
Citation (from within R,
enter citation("MetaboSignal")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaboSignal")
Documentation
| HTML | R Script | MetaboSignal |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.3) |
| Imports | KEGGgraph, mygene, hpar, org.Hs.eg.db, igraph, RCurl, biomaRt, KEGGREST, AnnotationDbi, MWASTools, stats, graphics, utils |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MetaboSignal_1.6.0.tar.gz |
| Windows Binary | MetaboSignal_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | MetaboSignal_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboSignal |
| Package Short Url | http://bioconductor.org/packages/MetaboSignal/ |
| Package Downloads Report | Download Stats |
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