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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiDataSet")
In most cases, you don't need to download the package archive at all.
MultiDataSet
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Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet
Bioconductor version: Release (3.5)
Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet. MultiDataSet is designed for integrating multi omics data sets and MethylationSet to contain normalized methylation data. These package contains base classes for MEAL and rexposome packages.
Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]
Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>
Citation (from within R,
enter citation("MultiDataSet")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MultiDataSet")
Documentation
| HTML | R Script | Adding a new type of data to MultiDataSet objects |
| HTML | R Script | Integration of methylation and expression using MultiDataSet |
| HTML | R Script | Introduction to MultiDataSet |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | DataRepresentation, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | file LICENSE |
| Depends | R (>= 3.3), Biobase |
| Imports | BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils |
| LinkingTo | |
| Suggests | MEALData, minfi, minfiData, knitr, rmarkdown, testthat, methylumi, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | MEAL |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MultiDataSet_1.4.0.tar.gz |
| Windows Binary | MultiDataSet_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | MultiDataSet_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MultiDataSet |
| Package Short Url | http://bioconductor.org/packages/MultiDataSet/ |
| Package Downloads Report | Download Stats |
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