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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Organism.dplyr")
In most cases, you don't need to download the package archive at all.
Organism.dplyr
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dplyr-based Access to Bioconductor Annotation Resources
Bioconductor version: Release (3.5)
This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).
Author: Martin Morgan [aut, cre], Yubo Cheng [ctb]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
Citation (from within R,
enter citation("Organism.dplyr")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Organism.dplyr")
Documentation
| HTML | R Script | Organism.dplyr |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, GenomeAnnotation, Sequencing, Software |
| Version | 1.2.2 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), dplyr (>= 0.7.0) |
| Imports | RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, methods, tools, utils, BiocFileCache, dbplyr, DBI |
| LinkingTo | |
| Suggests | org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Organism.dplyr_1.2.2.tar.gz |
| Windows Binary | Organism.dplyr_1.2.2.zip |
| Mac OS X 10.11 (El Capitan) | Organism.dplyr_1.2.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Organism.dplyr |
| Package Short Url | http://bioconductor.org/packages/Organism.dplyr/ |
| Package Downloads Report | Download Stats |
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