To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCAN")
In most cases, you don't need to download the package archive at all.
PCAN
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Phenotype Consensus ANalysis (PCAN)
Bioconductor version: Release (3.5)
Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).
Author: Matthew Page and Patrice Godard
Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>
Citation (from within R,
enter citation("PCAN")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCAN")
Documentation
| HTML | R Script | Assessing gene relevance for a set of phenotypes |
| Reference Manual |
Details
| biocViews | Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | CC BY-NC-ND 4.0 |
| Depends | R (>= 3.3), BiocParallel |
| Imports | grDevices, stats |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PCAN_1.4.0.tar.gz |
| Windows Binary | PCAN_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | PCAN_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PCAN |
| Package Short Url | http://bioconductor.org/packages/PCAN/ |
| Package Downloads Report | Download Stats |
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