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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")
In most cases, you don't need to download the package archive at all.
ReactomePA
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Reactome Pathway Analysis
Bioconductor version: Release (3.5)
This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.
Author: Guangchuang Yu [aut, cre], Vladislav Petyuk [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R,
enter citation("ReactomePA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")
Documentation
| HTML | R Script | An R package for Reactome Pathway Analysis |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Reactome, Software, Visualization |
| Version | 1.20.2 |
| In Bioconductor since | BioC 2.10 (R-2.15) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.1), DOSE(>= 3.0.0) |
| Imports | AnnotationDbi, reactome.db, igraph, graphite |
| LinkingTo | |
| Suggests | BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://guangchuangyu.github.io/ReactomePA |
| BugReports | https://github.com/GuangchuangYu/ReactomePA/issues |
| Depends On Me | |
| Imports Me | bioCancer, LINC |
| Suggests Me | ChIPseeker, CINdex, clusterProfiler |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ReactomePA_1.20.2.tar.gz |
| Windows Binary | ReactomePA_1.20.2.zip |
| Mac OS X 10.11 (El Capitan) | ReactomePA_1.20.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ReactomePA |
| Package Short Url | http://bioconductor.org/packages/ReactomePA/ |
| Package Downloads Report | Download Stats |
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