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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")
In most cases, you don't need to download the package archive at all.
SPLINTER
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Splice Interpreter Of Transcripts
Bioconductor version: Release (3.5)
SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.
Author: Diana Low
Maintainer: Diana Low <dlow at imcb.a-star.edu.sg>
Citation (from within R,
enter citation("SPLINTER")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SPLINTER")
| R Script | SPLINTER | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AlternativeSplicing, GeneExpression, RNASeq, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL-2 |
| Depends | R (>= 3.3.0), grDevices, stats |
| Imports | graphics, ggplot2, seqLogo, Biostrings, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, BSgenome.Mmusculus.UCSC.mm9 |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SPLINTER_1.2.0.tar.gz |
| Windows Binary | SPLINTER_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | SPLINTER_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SPLINTER |
| Package Short Url | http://bioconductor.org/packages/SPLINTER/ |
| Package Downloads Report | Download Stats |
Documentation »
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