- Home
- Bioconductor 3.5
- Software Packages
- crisprseekplus
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("crisprseekplus")
In most cases, you don't need to download the package archive at all.
crisprseekplus
|
|
|
|
|
crisprseekplus
Bioconductor version: Release (3.5)
Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.
Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>
Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>
Citation (from within R,
enter citation("crisprseekplus")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("crisprseekplus")
Documentation
| HTML | R Script | DEBrowser Vignette |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GeneRegulation, SequenceMatching, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0), shiny, shinyjs, CRISPRseek |
| Imports | DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocInstaller, BSgenome, AnnotationDbi, hash |
| LinkingTo | |
| Suggests | testthat, rmarkdown, knitr, R.rsp |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/UMMS-Biocore/crisprseekplus |
| BugReports | https://github.com/UMMS-Biocore/crisprseekplus/issues/new |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | crisprseekplus_1.2.0.tar.gz |
| Windows Binary | crisprseekplus_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | crisprseekplus_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprseekplus |
| Package Short Url | http://bioconductor.org/packages/crisprseekplus/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
