To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")
In most cases, you don't need to download the package archive at all.
gaggle
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Broadcast data between R and Gaggle
Bioconductor version: Release (3.5)
This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.
Author: Paul Shannon <pshannon at systemsbiology.org>
Maintainer: Christopher Bare <cbare at systemsbiology.org>
Citation (from within R,
enter citation("gaggle")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gaggle")
| R Script | Gaggle Overview | |
| Reference Manual |
Details
| biocViews | Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.44.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (11 years) |
| License | GPL version 2 or newer |
| Depends | R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://gaggle.systemsbiology.net/docs/geese/r/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gaggle_1.44.0.tar.gz |
| Windows Binary | gaggle_1.44.0.zip |
| Mac OS X 10.11 (El Capitan) | gaggle_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gaggle |
| Package Short Url | http://bioconductor.org/packages/gaggle/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
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Support »
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