To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")
In most cases, you don't need to download the package archive at all.
genefu
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Computation of Gene Expression-Based Signatures in Breast Cancer
Bioconductor version: Release (3.5)
Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>
Citation (from within R,
enter citation("genefu")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genefu")
| R Script | genefu An Introduction (HowTo) | |
| Reference Manual | ||
| Text | README |
Details
| biocViews | Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization |
| Version | 2.8.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (6.5 years) |
| License | Artistic-2.0 |
| Depends | survcomp, mclust, limma, biomaRt, iC10, AIMS, R (>= 2.10) |
| Imports | amap |
| LinkingTo | |
| Suggests | GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival |
| SystemRequirements | |
| Enhances | |
| URL | http://www.pmgenomics.ca/bhklab/software/genefu |
| Depends On Me | pbcmc |
| Imports Me | |
| Suggests Me | breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genefu_2.8.0.tar.gz |
| Windows Binary | genefu_2.8.0.zip |
| Mac OS X 10.11 (El Capitan) | genefu_2.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genefu |
| Package Short Url | http://bioconductor.org/packages/genefu/ |
| Package Downloads Report | Download Stats |
Documentation »
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