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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gtrellis")
In most cases, you don't need to download the package archive at all.
gtrellis
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Genome Level Trellis Layout
Bioconductor version: Release (3.5)
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("gtrellis")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gtrellis")
Documentation
| HTML | R Script | Make Genome-level Trellis Graph |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), grid, IRanges, GenomicRanges |
| Imports | circlize (>= 0.3.3), GetoptLong, grDevices, utils |
| LinkingTo | |
| Suggests | testthat (>= 1.0.0), knitr, RColorBrewer, markdown, ComplexHeatmap(>= 1.9.7), Cairo, png, jpeg, tiff |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/gtrellis |
| Depends On Me | |
| Imports Me | YAPSA |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gtrellis_1.8.0.tar.gz |
| Windows Binary | gtrellis_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | gtrellis_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gtrellis |
| Package Short Url | http://bioconductor.org/packages/gtrellis/ |
| Package Downloads Report | Download Stats |
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