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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maftools")
In most cases, you don't need to download the package archive at all.
maftools
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Summarize, Analyze and Visualize MAF Files
Bioconductor version: Release (3.5)
Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.
Author: Anand Mayakonda <anand_mt at hotmail.com>
Maintainer: Anand Mayakonda <anand_mt at hotmail.com>
Citation (from within R,
enter citation("maftools")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maftools")
Documentation
| HTML | R Script | Summarize, Analyze and Visualize MAF Files |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Classification, DNASeq, DataRepresentation, DriverMutation, FeatureExtraction, FunctionalGenomics, Sequencing, Software, SomaticMutation, VariantAnnotation, Visualization |
| Version | 1.2.30 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.3) |
| Imports | data.table, ggplot2 (>= 2.0), cowplot, cometExactTest, RColorBrewer, NMF, ggrepel, methods, ComplexHeatmap, mclust, VariantAnnotation, Biostrings, Rsamtools, rjson, grid, DPpackage, wordcloud, grDevices, changepoint, gridExtra, survival |
| LinkingTo | |
| Suggests | knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/PoisonAlien/maftools |
| BugReports | https://github.com/PoisonAlien/maftools/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TCGAbiolinks |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | maftools_1.2.30.tar.gz |
| Windows Binary | maftools_1.2.30.zip |
| Mac OS X 10.11 (El Capitan) | maftools_1.2.30.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/maftools |
| Package Short Url | http://bioconductor.org/packages/maftools/ |
| Package Downloads Report | Download Stats |
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