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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msPurity")
In most cases, you don't need to download the package archive at all.
msPurity
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Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Bioconductor version: Release (3.5)
Assess the contribution of the targeted precursor in fragmentation acquired or anticipated isolation windows using a metric called "precursor purity". Also provides simple processing steps (averaging, filtering, blank subtraction, etc) for DI-MS data. Works for both LC-MS(/MS) and DI-MS(/MS) data.
Author: Thomas N. Lawson, Ralf Weber, Martin Jones, Mark Viant, Warwick Dunn
Maintainer: Thomas N. Lawson <thomas.nigel.lawson at gmail.com>
Citation (from within R,
enter citation("msPurity")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msPurity")
Documentation
| HTML | R Script | msPurity |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL (>= 2) |
| Depends | Rcpp |
| Imports | plyr, foreach, parallel, doSNOW, stringr, mzR, reshape2, fastcluster, ggplot2, sapa |
| LinkingTo | |
| Suggests | testthat, xcms, BiocStyle, knitr, rmarkdown, msPurityData |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msPurity_1.2.0.tar.gz |
| Windows Binary | msPurity_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | msPurity_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/msPurity |
| Package Short Url | http://bioconductor.org/packages/msPurity/ |
| Package Downloads Report | Download Stats |
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