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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")
In most cases, you don't need to download the package archive at all.
nucleoSim
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Generate synthetic nucleosome maps
Bioconductor version: Release (3.5)
This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.
Author: Rawane Samb [aut], Astrid Deschênes [cre, aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschenes <adeschen at hotmail.com>
Citation (from within R,
enter citation("nucleoSim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")
Documentation
| HTML | R Script | Generate synthetic nucleosome maps |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, Genetics, Sequencing, Software, StatisticalMethod |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | stats, IRanges, S4Vectors, graphics, methods |
| LinkingTo | |
| Suggests | BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/arnauddroitlab/nucleoSim |
| BugReports | https://github.com/arnauddroitlab/nucleoSim/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RJMCMCNucleosomes |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nucleoSim_1.4.0.tar.gz |
| Windows Binary | nucleoSim_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | nucleoSim_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nucleoSim |
| Package Short Url | http://bioconductor.org/packages/nucleoSim/ |
| Package Downloads Report | Download Stats |
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