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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")
In most cases, you don't need to download the package archive at all.
pdInfoBuilder
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Platform Design Information Package Builder
Bioconductor version: Release (3.5)
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>
Citation (from within R,
enter citation("pdInfoBuilder")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")
| Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | ||
| R Script | PDInfo Package Building Affymetrix Mapping Chips | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5) |
| Imports | Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22) |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | maqcExpression4plex |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pdInfoBuilder_1.40.0.tar.gz |
| Windows Binary | pdInfoBuilder_1.40.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | pdInfoBuilder_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pdInfoBuilder |
| Package Short Url | http://bioconductor.org/packages/pdInfoBuilder/ |
| Package Downloads Report | Download Stats |
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