To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rqt")
In most cases, you don't need to download the package archive at all.
rqt
|
|
|
|
|
rqt: utilities for gene-level meta-analysis
Bioconductor version: Release (3.5)
Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: "Gene-set association tests for next-generation sequencing data" by Lee et al (2016), Bioinformatics, 32(17), i611-i619,
Author: I. Y. Zhbannikov, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov at duke.edu>
Citation (from within R,
enter citation("rqt")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rqt")
Documentation
| HTML | R Script | Tutorial for rqt package |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GenomeWideAssociation, PrincipalComponent, Regression, Sequencing, Software, StatisticalMethod, Survival |
| Version | 1.2.2 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL |
| Depends | R (>= 3.4), SummarizedExperiment |
| Imports | stats, Matrix, ropls, methods, car, RUnit, metap, CompQuadForm, glmnet, utils, pls |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/izhbannikov/rqt |
| BugReports | https://github.com/izhbannikov/rqt/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rqt_1.2.2.tar.gz |
| Windows Binary | rqt_1.2.2.zip |
| Mac OS X 10.11 (El Capitan) | rqt_1.2.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rqt |
| Package Short Url | http://bioconductor.org/packages/rqt/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
