To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("uSORT")
In most cases, you don't need to download the package archive at all.
uSORT
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uSORT: A self-refining ordering pipeline for gene selection
Bioconductor version: Release (3.5)
This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.
Author: Mai Chan Lau, Hao Chen, Jinmiao Chen
Maintainer: Hao Chen <chen_hao at immunol.a-star.edu.sg>
Citation (from within R,
enter citation("uSORT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("uSORT")
Documentation
| HTML | R Script | Quick Start |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBiology, DNASeq, GUI, RNASeq, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), tcltk |
| Imports | igraph, Matrix, RANN, RSpectra, VGAM, gplots, parallel, plyr, methods, cluster, Biobase, fpc, BiocGenerics, monocle, grDevices, graphics, stats, utils |
| LinkingTo | |
| Suggests | knitr, RUnit, testthat, ggplot2 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | uSORT_1.2.0.tar.gz |
| Windows Binary | uSORT_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | uSORT_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/uSORT |
| Package Short Url | http://bioconductor.org/packages/uSORT/ |
| Package Downloads Report | Download Stats |
Documentation »
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