derfinderHelper

DOI: 10.18129/B9.bioc.derfinderHelper    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see derfinderHelper.

derfinder helper package

Bioconductor version: 3.8

Helper package for speeding up the derfinder package when using multiple cores.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("derfinderHelper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderHelper")

 

HTML	R Script	Introduction to derfinderHelper
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version	1.16.1
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.2)
Imports	IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2)
LinkingTo
Suggests	sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6), BiocStyle(>= 2.5.19), rmarkdown (>= 0.3.3), testthat
SystemRequirements
Enhances
URL	https://github.com/leekgroup/derfinderHelper
BugReports	https://support.bioconductor.org/t/derfinderHelper
Depends On Me
Imports Me	derfinder
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	derfinderHelper_1.16.1.tar.gz
Windows Binary	derfinderHelper_1.16.1.zip
Mac OS X 10.11 (El Capitan)	derfinderHelper_1.16.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/derfinderHelper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/derfinderHelper
Package Short Url	http://bioconductor.org/packages/derfinderHelper/
Package Downloads Report	Download Stats