BiocCheck

DOI: 10.18129/B9.bioc.BiocCheck    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocCheck.

Bioconductor-specific package checks

Bioconductor version: 3.9

Executes Bioconductor-specific package checks.

Author: Bioconductor Package Maintainer [aut, cre], Lori Shepherd [ctb], Daniel von Twisk [ctb], Kevin Rue [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")

 

HTML	R Script	BiocCheck: Ensuring Bioconductor package guidelines
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	biocViews(>= 1.33.7), BiocManager, stringdist, graph, httr, tools, optparse, codetools, methods, utils, knitr
LinkingTo
Suggests	RUnit, BiocGenerics, Biobase, RJSONIO, rmarkdown, devtools (>= 1.4.1), usethis, BiocStyle
SystemRequirements
Enhances	codetoolsBioC
URL	https://github.com/Bioconductor/BiocCheck/issues
Depends On Me
Imports Me	ExperimentHubData
Suggests Me	CNPBayes, curatedMetagenomicData, HMP16SData, SpectralTAD
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocCheck_1.20.0.tar.gz
Windows Binary	BiocCheck_1.20.0.zip
Mac OS X 10.11 (El Capitan)	BiocCheck_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocCheck
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocCheck
Package Short Url	https://bioconductor.org/packages/BiocCheck/
Package Downloads Report	Download Stats