FoldGO

DOI: 10.18129/B9.bioc.FoldGO    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FoldGO.

Package for Fold-specific GO Terms Recognition

Bioconductor version: 3.9

FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.

Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]

Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FoldGO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FoldGO")

 

HTML	R Script	FoldGO: a tool for fold-change-specific functional enrichment analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GO, GeneExpression, Software
Version	1.2.3
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-3
Depends	R (>= 3.5)
Imports	topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods
LinkingTo
Suggests	knitr, rmarkdown, devtools, kableExtra
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FoldGO_1.2.3.tar.gz
Windows Binary	FoldGO_1.2.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	FoldGO_1.2.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/FoldGO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FoldGO
Package Short Url	https://bioconductor.org/packages/FoldGO/
Package Downloads Report	Download Stats