GenRank

DOI: 10.18129/B9.bioc.GenRank    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GenRank.

Candidate gene prioritization based on convergent evidence

Bioconductor version: 3.9

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

Author: Chakravarthi Kanduri

Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenRank")

 

HTML	R Script	Introduction to GenRank Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.3)
Imports	matrixStats, reshape2, survcomp
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/chakri9/GenRank
BugReports	https://github.com/chakri9/GenRank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenRank_1.12.0.tar.gz
Windows Binary	GenRank_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GenRank_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenRank
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenRank
Package Short Url	https://bioconductor.org/packages/GenRank/
Package Downloads Report	Download Stats