GeneExpressionSignature

DOI: 10.18129/B9.bioc.GeneExpressionSignature    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GeneExpressionSignature.

Gene Expression Signature based Similarity Metric

Bioconductor version: 3.9

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Author: Yang Cao

Maintainer: Yang Cao <yiluheihei at gmail.com>, Fei Li <pittacus at gmail.com>,Lu Han <hanl8910 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneExpressionSignature")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneExpressionSignature")

 

PDF	R Script	GeneExpressionSignature
PDF		Reference Manual

Details

biocViews	GeneExpression, Software
Version	1.30.0
In Bioconductor since	BioC 2.9 (R-2.14) (8 years)
License	GPL-2
Depends	R (>= 2.13), Biobase, PGSEA
Imports
LinkingTo
Suggests	apcluster, GEOquery
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneExpressionSignature_1.30.0.tar.gz
Windows Binary	GeneExpressionSignature_1.30.0.zip
Mac OS X 10.11 (El Capitan)	GeneExpressionSignature_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneExpressionSignature
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneExpressionSignature
Package Short Url	https://bioconductor.org/packages/GeneExpressionSignature/
Package Downloads Report	Download Stats